PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000530G0190
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 216aa    MW: 23305.7 Da    PI: 8.0628
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000530G0190genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12250455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +h ++Er+RR+++N+ +  Lr+l P     + k+ + a+i   Ave+Ik+Lq
  PH01000530G0190  2 SHIAVERNRRRQMNDHLKVLRSLTPAF---YIKRGDQASIIGGAVEFIKELQ 50
                     89************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.75E-12154No hitNo description
SuperFamilySSF474591.83E-15168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.767149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-10250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-13264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNDHLKV LRSLTPAFYI KRGDQASIIG GAVEFIKELQ TVLESLEAKK  60
KRRQHSSAAS SCFSLSPTPS PRSLLTCSPA TGSSAGSSSV VSANNNNASV SKELAACCNS  120
PVADVEAKIS GSNVLLRTLS RRIPGQAVKI IGLLESLDLE VLHVNISTME DTVLHSFVIK  180
IGLECQLSVE DLAWEVQQTF CCQQELTYSS MAMAI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15862KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698222e-64EU969822.1 Zea mays clone 336092 DNA binding protein mRNA, complete cds.
GenBankKJ7269692e-64KJ726969.1 Zea mays clone pUT3670 bHLH transcription factor (bHLH82) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968634.12e-96PREDICTED: transcription factor MUTE
SwissprotQ9M8K62e-77MUTE_ARATH; Transcription factor MUTE
TrEMBLW5BPW01e-109W5BPW0_WHEAT; Uncharacterized protein
STRINGSi004438m4e-92(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.15e-72bHLH family protein